PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011993-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 612aa    MW: 67960.4 Da    PI: 6.756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011993-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55.1e-13445491455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  WALNUT_00011993-RA 445 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 491
                         799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-5552240IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047441490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.30E-15444495No hitNo description
SuperFamilySSF474593.27E-18444504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-18445503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10445491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-16447496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MKIEGGLGGG LWNDEDKTML AAVLGTRAFD YLLSSSVSNE NLLMAVGSDE HLQTTLSDLV  60
DCPNASNFSW NYAIFWQLSR SKSGDWVLGW GDGSCREPRE GEESEAMRIL NLRLEDETQQ  120
KMRKRVLQNL HKLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPQGEGG PGKCFASGKH  180
AWFSDALKLQ SDYCIRSFLA KSAGIQTIVL VPIEVGVVEL GSVRSVGENL ELLQSIKSSF  240
STHPFPAARV KSVPAFPVVN DKKDENVPFT NLGLVDRVEA VPKIFGQDLN SGYLGRPHHR  300
EKLAVRKMEE RPWEVSPNRS KIAYPSPRNG LHGSGWGHVR GSGVKQGNPA EIYCQQTPNN  360
LQELVNGARE EFRLNHYQPQ KQLQMQIDFS AATSRPSVIS RPISAESEHS DGEATCKEER  420
AGVADERRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL  480
GDAIAYINEL QAKLKVMEAE RERSGTSSRD TSSLEANPNA ENPYRTPDID IQAAHDEVIV  540
RVSCPLDSHP TSRVIQAFKE AQATVIESKI TTANDTVFHT FVIKSQGSEQ LTKEKLIAVF  600
SSNSLQPLSS GG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-21482415193Transcription factor MYC3
4rqw_B1e-21482415193Transcription factor MYC3
4rs9_A1e-21482415193Transcription factor MYC3
4yz6_A1e-21482415193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426434RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888724.10.0PREDICTED: transcription factor bHLH13
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A061DSF00.0A0A061DSF0_THECC; Myc2 bHLH protein isoform 1
STRINGPOPTR_0014s09520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein